PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676737462
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family DBB
Protein Properties Length: 337aa    MW: 37287.1 Da    PI: 6.2295
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676737462genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.61.1e-07334435
   zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHk 35
                +C+ ++++e++ fC+ ++  lC+ C    H+
  676737462  3 IRCDVCDKEEASVFCTADEASLCDGCDHRVHH 34
               58*************************99974 PP
2zf-B_box33.11.2e-105694238
   zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
               + ++C+ ++ek++ lfC++++  lC+dC +++H+   Ht
  676737462 56 SSPICDICQEKKALLFCQQDRAILCKDCDSSIHSAneHT 94
               5689*****************************657876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.623147IPR000315B-box-type zinc finger
CDDcd000218.28E-6334No hitNo description
PfamPF006431.2E-5334IPR000315B-box-type zinc finger
SMARTSM003362.9E-6447IPR000315B-box-type zinc finger
SuperFamilySSF578456.87E-54994No hitNo description
PROSITE profilePS5011910.49555102IPR000315B-box-type zinc finger
SMARTSM003363.3E-1555102IPR000315B-box-type zinc finger
PfamPF006437.8E-95795IPR000315B-box-type zinc finger
CDDcd000213.19E-1159102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009641Biological Processshade avoidance
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MKIRCDVCDK EEASVFCTAD EASLCDGCDH RVHHANKLAS KHLRFSLLYP SSSNNSSPIC  60
DICQEKKALL FCQQDRAILC KDCDSSIHSA NEHTKKHDRF LLTGVKLSAT SSVYKPTSES  120
SSSSSSQDCS VPGSSSVSNP PPPFKKPTSS APQSQSNNSK IQPSKFGGDA PVNQWGSTST  180
ISEYLIDTLP GWHVEDFLDS SLPPFGFFKS GDDDGVLPYM EAEDDSTKKN NNNTVSLPSK  240
NMGIWVPQIP QTLPSSYTNQ YFSQDNNNNN DIQFGMYNNK ETSPEVQTYA PIQNMKQQGQ  300
NKRWYDDGGF TVPQISTTTT FDHPSPLTSN KKSRSFW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935360.0AB493536.1 Arabidopsis thaliana At1g75540 mRNA for hypothetical protein, partial cds, clone: RAAt1g75540.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009106205.10.0PREDICTED: probable salt tolerance-like protein At1g75540
RefseqXP_013649894.10.0PREDICTED: B-box zinc finger protein 21-like
RefseqXP_013717821.10.0PREDICTED: B-box zinc finger protein 21-like
SwissprotQ9LQZ70.0BBX21_ARATH; B-box zinc finger protein 21
TrEMBLA0A078IDU40.0A0A078IDU4_BRANA; BnaAnng09120D protein
TrEMBLM4DH580.0M4DH58_BRARP; Uncharacterized protein
STRINGBra015835.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54002748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.11e-153salt tolerance homolog2